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My only issue is that all my nearly 10,000 images I have downloaded from here, no longer have have the same file names as the site. Because of this I am going to end up with a ton of duplicates when I accidentally re-download something which I didn't know I already had. Could someone at please make a renaming batch file to rename all the files with the md5 file names to their new file names?

While I wouldn't have had much of an issue if the file names were like this from the start, as it is now this is going to make for a huge waste of time and bandwidth. People are going to either have to rename everything, re-download everything, and/or waste space with thousands of identical images with the different names.