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Thank you Biohazix, I tested your script on a few images and it works well. This will save me a lot of time.

As it seems the python script isn't very kind to the server, I'll hold off on using it for awhile. Is anybody able to modify a kinder script as petopeto suggested or make a new script to use the csv dump?

That got me thinking. If someone is willing to make a script for it, admin2, could you maybe once a month generate a dump with all the images that had their tags changed which contains both the old tags and updated tags in it (if that is even possible)? An automated script to do renaming for tag changes could be very useful and would negate another problem the new system causes.